rs30390196 SNP Detail

Summary

• ID
  rs30390196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93004622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCACTGA GAGCCATCTT
  GACACTAGCC ACATAGCATA AGCCCTTGTG GTTGGTTACC CTGGGGCTAC CTCAGCCACA
  GGATAGCCCA GGCTTTGTGG CTCTGTAGTG TCTGCTCCTG TACTGAAAGG AATAAGTAGC
  TATACCACAA ACACCTGCCA GGGGTCAACT TCCCATCACC CCTGAGCCCT GAGCTACCAA
  Y
  TCCCACGTGG GGATGAGGAC AGTCATCGTG TGGATGAGTG ACAGGAATAG ATGCTCATTT
  TAGGTCAGAA AAGCAATGCC AACCACACTT CGAACTCCCA TGATCTACAC TCAGAGTCAG
  ATGGCAGGTA GGGCGTCATA CCTCCACAGA GTAGGACATG TTGTCGTTGG TGGTGTCGTT
  GATTCGAGAG AAGAGGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49628978	NES12929922	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30390196					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49628978	NES12929922	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93004622 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr35385	regulatory region 35385	1780 bp proximal
Rr371712	regulatory region 371712	1969 bp upstream
Tssr13001	transcription start site region 13001	692 bp upstream
Tssr13002	transcription start site region 13002	662 bp upstream
Tssr13003	transcription start site region 13003	645 bp upstream