rs30390197 SNP Detail

Summary

• ID
  rs30390197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93004407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTGGGT AGGACATACA
  GGAAATCCAG ACTGTGGGCT CTGTATGAGT GTGAGTGTCA GCCTTCTCCA GATGTCCAGT
  TCTCTCTCCA TGTAACTGAC CTACAGGACC AAGCTACACC CTCAGGGACT CCAAGGTAGG
  ACAGTGGTTC CCAGAGGGGT AGTGTACACA AAGGACACTC AGCCAGGGTC AGCCTACTTT
  Y
  ATCTGCCCAG TCCTCTCCCA CTGAGAGCCA TCTTGACACT AGCCACATAG CATAAGCCCT
  TGTGGTTGGT TACCCTGGGG CTACCTCAGC CACAGGATAG CCCAGGCTTT GTGGCTCTGT
  AGTGTCTGCT CCTGTACTGA AAGGAATAAG TAGCTATACC ACAAACACCT GCCAGGGGTC
  AACTTCCCAT CACCCCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49628979	NES12929920	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30390197					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49628979	NES12929920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93004407 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr35385	regulatory region 35385	1995 bp proximal
Tssr13001	transcription start site region 13001	477 bp upstream
Tssr13002	transcription start site region 13002	447 bp upstream
Tssr13003	transcription start site region 13003	430 bp upstream