rs30391252 SNP Detail

Summary

• ID
  rs30391252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93002267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAAACC CTGGCAGTGA
  AACCTGTCCT CTCAAGTGGC CCCAGACTTC TCTTCTTAAG GCTGTTACTA TTTCATGGGG
  ACATAGTTGG GAGCATCACA CCGGGGCCAG GTGTCCCCAA CACTATCGGT GACTGATGTG
  GACCCTACTT GGCTCCTCTA CAGAGCTCTT TCCCCAAGAG ATTGAGAGAA TGTTGCATAG
  R
  GTGACCTTCG GGCAAAGGGA CAGAGAGACT AACAAGAGGC TCAGAATGTC CCTGATATCC
  TTCCAGAAGC CCAAGGATCG AATGATTAAG ATAAAGACCC CAGGAAACAA CAACCAGGCC
  GTGTTCTGAT CCCCTGAATG TGTCAAAGAG TCACTTGTAG GAGGGGCATC TGAAGTGGGG
  AATGCCAGGG CTATGCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49628995	NES12929900	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30391252					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49628995	NES12929900	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93002267 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr18462	regulatory region 18462	1667 bp distal
Rr35384	regulatory region 35384	1268 bp distal
Tssr13000	transcription start site region 13000	1441 bp upstream
Tssr13001	transcription start site region 13001	1652 bp downstream
Tssr13002	transcription start site region 13002	1681 bp downstream
Tssr13003	transcription start site region 13003	1698 bp downstream