rs30392261 SNP Detail

Summary

• ID
  rs30392261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90452334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAATGCA GGCCAGACAA
  TGCTACCTGG GCAGAGAGGT TGTCTGAGTC AAGTCCACGA GGAAGCCTAC AGAGTCATCA
  GAACCCTGAA GCAATGGCCA ACTCAGTTGT TCTTATCAGT CTTTCTCCTC TTGAAATATT
  CAAACTGTGG AAAGTTACCC AGGAATTATA GTCATAACTC ATAACTCAAT CAGATAAAAT
  Y
  CAGCATTCTC ATTGATGACA AAGGTCATAT TTCAGAAAGA ACATTGCGTA CTCTAGGATA
  CCTCAGAAAT GCTTTTTGTT TTGTTTTGTT TAAACCAGGA GATGGAGACA CTTCCTGATT
  CCCGTCAATA TATAAAAACA AAGTCAATTA CCAGCCCTTG CTGGTTTCAG CTCAACCTAG
  TGGCACAAAA GAAATGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47943253	NES12007859	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30392261					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47943253	NES12007859	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90452334 () rs orientation: forward

Symbol	Name	Function Class
Anks1b	ankyrin repeat and sterile alpha motif domain containing 1B	within coordinates
Gm66575	predicted gene, 66575	within coordinates
Rr436918	regulatory region 436918	1014 bp distal
Rr436919	regulatory region 436919	1311 bp proximal