rs30392349 SNP Detail

Summary

• ID
  rs30392349
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53496495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA CATCTCTGTG TCATCAAGGG
  S
  TTCAGAACTC TACACCAACT ATATT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss45536575	mCV24468545	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	G
ss46944200	NES10829661	PERLEGEN	MM_PANEL2	f	SNP							G		C
ss135182450	ENSMUSSNP2682303	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		G
ss320768896	CHEV_3_53392996	CHEVERUD	SCREENING_POP	f	SNP						C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs30392349					SNP	C	C	C	C	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46944200	NES10829661	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53496495 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576723	regulatory region 576723	1086 bp proximal
Rr576724	regulatory region 576724	1174 bp proximal