rs30394090 SNP Detail

Summary

• ID
  rs30394090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53498244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTTGAT CTATGAGGTC
  CATAAACAAA GGCATCACTA ATTCCTTTTA AGTCTCTCTG GAAAAGAGAA AGGGGGTGGG
  GGTGGGGGAG CCTCAATCAC AAACACAGCT ACAGGCATAG TTCGAATTCT AGCTTCCTCT
  CTTTTGAGTT GACACAAAGA AAGCTACAGT AGAGAAATAC GAGAGAGGGA GAAATGTCAA
  R
  ACTCCTGTTG ACCGAATGAA AATCTACACA GGGAGAAGCA ATCGGGGAAG AGGCACAGGG
  TCTGTTTCCT CTGAAATATT TAGAAGTAAA AACTACAGAC AATTTATGCT GTCGGAGGCT
  CGCTGAGAAT CAAAGGCAAC AGATCATGCG GCTGAAGCTG TGAAGGGATT GCTTCCTCAT
  CGTTTGACAT TTAACTCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MOLF/EiJ	WSB/EiJ
ss46944221	NES10829668	PERLEGEN	MM_PANEL2	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MOLF/EiJ	WSB/EiJ
rs30394090					SNP	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46944221	NES10829668	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53498244 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576723	regulatory region 576723	within coordinates
Rr576724	regulatory region 576724	554 bp distal