rs30397371 SNP Detail

Summary

• ID
  rs30397371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30852175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAT AGGTACAGGC AAACTACAAA
  Y
  GTACACATTA CACACAACCT TAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39181238	mCV24801977	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30397371					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30852175 () rs orientation: forward

Symbol	Name	Function Class
B930019K04Rik	RIKEN cDNA B930019K04 gene	within coordinates
Cpgi6281	CpG island 6281	929 bp distal
Cpgi6282	CpG island 6282	220 bp proximal
Nt5dc2	5'-nucleotidase domain containing 2	871 bp upstream
Rr404046	regulatory region 404046	1076 bp downstream
Rr489957	regulatory region 489957	772 bp distal
Rr489958	regulatory region 489958	994 bp distal
Rr489959	regulatory region 489959	345 bp proximal
Rr489960	regulatory region 489960	677 bp proximal
Tssr124915	transcription start site region 124915	835 bp upstream
Tssr124916	transcription start site region 124916	861 bp upstream
Tssr124917	transcription start site region 124917	897 bp upstream
Tssr127917	transcription start site region 127917	1295 bp upstream
Tssr127918	transcription start site region 127918	1258 bp upstream
Uqcc5	ubiquinol-cytochrome c reductase complex assembly factor 5	1281 bp upstream