rs30398340 SNP Detail

Summary

• ID
  rs30398340
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39305728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTTCTCACC CACTAAAGAT TCCTGTTTTG AATTCTAGGT TGAGTGCTTT ACCCCATTTT
  TTGATTGGGT TGTTTGGTTT TTTGGTGCTT AGCTTCTTGA GTTCTTCATA TATTTTGGAT
  ATTTGCACTC TATTGGATGT GGGATTAGTG AATGTTGGCA ATCTGTAGGT TGCCAATTTG
  TCTTATTTAC TATGTTTTTT TTGAGTTGCA GAAACTTTCC AGTTTTGTGA AGTCCCATTT
  ATTAATTCTT CATCTTAGAG CATGGACCAT TGGAGTTCTG TTTAGGAAAT CCCCCCCCCC
  M
  CACACACACA CCTGTGTCAA TGAGTTCAAG GGTCTTTCCC ACTTTCTATT TTATTAGATC
  CAGTGTATCT GGTGTTTGGT TGAGGTCATT GGTCCACTTG GACTTGAGCT TTGTTCAAGG
  TGACAAATAC GAGTCTATTT TCATTTTTCT ACATACAGAC AGCCAGTTAG ACCAGCATTA
  TTTATTGAAG ATGCTTCCTT TTTTTCTACT GTATATTTTT GGGTTCTTTG TCAAAGACCA
  AGTGTGCATA AATGTGTGAT TTTACTTCTA GGTCTTCAAT TCTATTCTAC TGATCAACCT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39677248	mCV23365303	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30398340					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39305728 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	1796 bp downstream
Tssr156338	transcription start site region 156338	1763 bp downstream
Tssr156339	transcription start site region 156339	1737 bp downstream
Tssr156340	transcription start site region 156340	1613 bp downstream
Tssr156341	transcription start site region 156341	1587 bp downstream