rs30399221 SNP Detail

Summary

• ID
  rs30399221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4879989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAA TTGAGATTGG TATTCGTATA
  R
  TTTGAGTGGC AATTCCCAGA CCCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39677058	mCV25314765	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss146008385	ENSMUSSNP2917879	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30399221					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4879989 () rs orientation: forward

Symbol	Name	Function Class
Ccs	copper chaperone for superoxide dismutase	within coordinates
Gm59022	predicted gene, 59022	17 bp downstream
Rr542851	regulatory region 542851	441 bp distal
Tssr157516	transcription start site region 157516	1319 bp upstream