rs30399425 SNP Detail

Summary

• ID
  rs30399425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:36193371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGAGGCA GAGGCAGGTG
  GACCTCTGAG TTCAAAGCCA GCCTGGTCTA CATAGTGAGT TACAGGACAG CCAAGGCTAC
  ACAGAGAAAC CCTGTCTTGG AAAAACATAA ACAAAAACAA AAATAAAAAG CCCAACCCAT
  CAACCAATCA ACCAGCCCAC CCCCTTCTCT TTCCCTCCTC CCCTCTCAAG CAATACAAAC
  R
  TCATGGCATG AATCCTTCGT TTTACCTTAT ACTTGAATGT GTACCGTCTC TCTGAGCATG
  CTCATTAATC TGTCTGCCCC GCAGGACAAA GAATTACTCC CAGGCTCCTC CCACCAGTGG
  TGAAGATGTT CTGAATGCCT CTGCTTTCTT ATTTTCTCTC CCACCCCTAA CAAGGACACT
  TTATTGGTAG AACTGGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47444095	NES11500303	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30399425					SNP	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47444095	NES11500303	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:36193371 () rs orientation: forward

Symbol	Name	Function Class
Gm35021	predicted gene, 35021	within coordinates
Gm40492	predicted gene, 40492	1466 bp downstream
Rr662255	regulatory region 662255	763 bp distal
Rr662256	regulatory region 662256	624 bp distal