rs30399428 SNP Detail

Summary

• ID
  rs30399428
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:36193629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCCACCCC TAACAAGGAC ACTTTATTGG TAGAACTGGG
  GAATCCTCAC CATACATAGT TTTTGTAGCT TTTTTGGAAG CAATATTATG ATTAAGAAAA
  W
  AAAAATTACA TGAAGAATAT TTAGTGATTA TAAACATTTT TGCTAGTTAC ATTTTGTTCT
  TTGGAAATTT TGTACATGTG TATAATATGT TCTGATAGTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss47444098	NES11500304	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs30399428					SNP	A	A	T	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47444098	NES11500304	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:36193629 () rs orientation: forward

Symbol	Name	Function Class
Gm35021	predicted gene, 35021	within coordinates
Gm40492	predicted gene, 40492	1208 bp downstream
Rr662255	regulatory region 662255	1021 bp distal
Rr662256	regulatory region 662256	882 bp distal