rs30400194 SNP Detail

Summary

• ID
  rs30400194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:36194298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG AAGAATGGTC AATTGATGAT
  R
  ATGTCATTTC CCACCTGTGG CCCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46273296	mCV24730386	ABI	CRAMUS_MOUSE	f	SNP	A			G		A
ss47444104	NES11500279	PERLEGEN	MM_PANEL2	f	SNP	A	A	G		G	A	A	G		G	A	G		G
ss149167757	ENSMUSSNP4458481	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					A
ss322589565	CHEV_8_36790198	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30400194					SNP	A	A	G	G	G	A	A	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47444104	NES11500279	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:36194298 () rs orientation: forward

Symbol	Name	Function Class
Gm35021	predicted gene, 35021	within coordinates
Gm40492	predicted gene, 40492	539 bp downstream
Rr662255	regulatory region 662255	1690 bp distal
Rr662256	regulatory region 662256	1551 bp distal