rs30400197 SNP Detail

Summary

• ID
  rs30400197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:36194463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TAATCTGTAG TCTCCCGGGC
  R
  TGAATTTGTT GTACTGTGAT TAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46181178	mCV24730564	ABI	CRAMUS_MOUSE	f	SNP	G	G				A		G
ss47444107	NES11500281	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	A		A	G		A	G	A		A
ss149167762	ENSMUSSNP2690976	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss322589566	CHEV_8_36790363	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30400197					SNP	G	G	G	G	A	A	A	G	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47444107	NES11500281	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:36194463 () rs orientation: forward

Symbol	Name	Function Class
Gm35021	predicted gene, 35021	within coordinates
Gm40492	predicted gene, 40492	374 bp downstream
Rr662255	regulatory region 662255	1855 bp distal
Rr662256	regulatory region 662256	1716 bp distal