rs30400614 SNP Detail

Summary

• ID
  rs30400614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7672489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT AGTCTTGATT CACACACACA
  Y
  ACAAAGTCTG CCAGATTTTC TTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45424338	mCV25135861	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss134559869	ENSMUSSNP2423136	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss320643271	CHEV_3_7607429	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30400614					SNP	C	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7672489 () rs orientation: forward

Symbol	Name	Function Class
Il7	interleukin 7	within coordinates
Rr81463	regulatory region 81463	1489 bp distal
Tssr32539	transcription start site region 32539	910 bp upstream
Tssr32540	transcription start site region 32540	879 bp upstream