rs30400638 SNP Detail

Summary

• ID
  rs30400638
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5651059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGC AGGCCTTTGA TCCCAGCACA
  S
  GAGAGGCAGA GGCAGGCGGA TTTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39678319	mCV25320794	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
ss146012738	ENSMUSSNP5174276	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C	G
ss325717122	CHEV_19_5601031	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30400638					SNP	G	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5651059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	662 bp proximal
Kat5	K(lysine) acetyltransferase 5	1983 bp downstream
Rnaseh2c	ribonuclease H2, subunit C	842 bp upstream
Rr363585	regulatory region 363585	541 bp proximal
Rr370434	regulatory region 370434	745 bp upstream
Tssr154457	transcription start site region 154457	810 bp upstream
Tssr154458	transcription start site region 154458	823 bp upstream