rs30401729 SNP Detail

Summary

• ID
  rs30401729
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11173846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGGTGG GAATAAGTAG
  CTGCTGGCAG CTACTTGTGA GGTCAAGGCA GGACGATTGC TCAGCCCAGG AATTCTAGAG
  CAATCTTGTC AACACAGTGA GACCCCACAT TTCAAAAAGT AAATAAAAGT ATTTTTTAGA
  AGGTCAAACG AGAGGGTATA AAAGATGGAG AATGGAGATG TGCCCACCTC TCTTTCCTCA
  M
  CCCCCTTTCT CCAGACCGTG TCCATTTTGA TGCTTAGCAA AAGTAAAGAG GCACACTGTT
  ACCTCACATT TCAGTTGTCC CAAGACCCAA GGATCCAGTT TCACCCTATC AGGCCTAGGC
  ACAGGCTGAA GAGAAGGATC ACCGTGGATG GTGCTCTCAG CGCTAGATCT GGCTGCATAG
  CCATCAGAGG CAGCAGCGCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39678534	mCV25122735	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30401729					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11173846 () rs orientation: forward

Symbol	Name	Function Class
4930526L06Rik	RIKEN cDNA 4930526L06 gene	335 bp upstream
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	202 bp downstream
Tssr158300	transcription start site region 158300	218 bp downstream