rs30402106 SNP Detail

Summary

• ID
  rs30402106
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53931311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACT CTACTAGTGA CAGGAGGCGC
  S
  GGCACATGGA GCTGCGTCTG AGAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39677342	mCV23307551	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	G
ss146526361	ENSMUSSNP7052277	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30402106					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53931311 () rs orientation: forward

Symbol	Name	Function Class
Bbip1	BBSome interacting protein 1	within coordinates
Cpgi11070	CpG island 11070	974 bp proximal
Rr394562	regulatory region 394562	within coordinates
Rr549683	regulatory region 549683	1432 bp distal
Rr549684	regulatory region 549684	602 bp proximal
Rr549685	regulatory region 549685	1011 bp proximal
Rr549686	regulatory region 549686	1290 bp proximal
Rr549687	regulatory region 549687	1437 bp proximal
Rr549688	regulatory region 549688	1570 bp proximal
Shoc2	Shoc2, leucine rich repeat scaffold protein	1426 bp upstream
Tssr5553	transcription start site region 5553	1379 bp downstream
Tssr157049	transcription start site region 157049	1183 bp upstream
Tssr157050	transcription start site region 157050	1960 bp upstream
Tssr157051	transcription start site region 157051	1990 bp upstream
Tssr159836	transcription start site region 159836	1285 bp downstream
Tssr159837	transcription start site region 159837	1353 bp downstream
Tssr159838	transcription start site region 159838	1556 bp downstream
Tssr159839	transcription start site region 159839	1741 bp downstream