rs30402480 SNP Detail

Summary

• ID
  rs30402480
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:38019708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG GACTCCAAGT ACTATTTAAG
  W
  AAGTGACTGC CCACGGTGGG GTGTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss39678164	mCV24514219	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss325800768	CHEV_19_38105750	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs30402480					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38019708 () rs orientation: forward

Symbol	Name	Function Class
Myof	myoferlin	within coordinates
Rr547220	regulatory region 547220	within coordinates
Rr547221	regulatory region 547221	1393 bp proximal
Tssr156239	transcription start site region 156239	1010 bp downstream
Tssr159104	transcription start site region 159104	609 bp upstream
Tssr159105	transcription start site region 159105	1652 bp downstream