rs30403401 SNP Detail

Summary

• ID
  rs30403401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127654705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAAGCTG GTCACCGAGT
  ATCTTCATGC TGCTCTCTGA CTAGCCAAGG TGACAGGCCA TATGAAGTGT GCCTACACTC
  CGAGGACTCA GCAGACCCGT GTTTCTGGTT TGAGTATTCT GGCAGTCACA CACAGACAGA
  GACATGACTC ATGTGTGAAG GATAGTGCTT TCAGGGGTCA TTTTACTCAA TTTCCAGAGA
  Y
  CATAGAGCAC TGCAGACATC AGGAAATGGT GCTAGGAAAG CCCCTGTAAT TGCAACCAAG
  ACTTAAAGTC TAGGTCTCTG TCTCGTTTCT TCCTACTCTT CCTCCTCCTT CTTTTTCCTC
  TCTCTTCTCT CTCTTTCCTC CCCTCTTCCT CTTCCTTTGC CTCCACCCCC TTCTAAGTAT
  TTCTGTCATT TTTAAAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45424833	mCV24302395	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss135873368	ENSMUSSNP5637870	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320957589	CHEV_3_127563974	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30403401					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127654705 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Rr584887	regulatory region 584887	342 bp proximal
Rr584888	regulatory region 584888	1457 bp proximal
Tssr31614	transcription start site region 31614	529 bp upstream