rs30404015 SNP Detail

Summary

• ID
  rs30404015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86428140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATA ACCAGGAAAT TGTGCATGGA
  Y
  TGAGGTGTGC ACATATATGT GCATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46404150	mCV24274709	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss136757215	ENSMUSSNP996660	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss323056647	CHEV_9_86439694	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30404015					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86428140 () rs orientation: forward

Symbol	Name	Function Class
D9Mit111	DNA segment, Chr 9, Massachusetts Institute of Technology 111	426 bp proximal
Dop1a	DOP1 leucine zipper like protein A	within coordinates
Gm17530	predicted gene, 17530	595 bp downstream
Tssr86395	transcription start site region 86395	845 bp downstream
Tssr86396	transcription start site region 86396	818 bp downstream