rs30404090 SNP Detail

Summary

• ID
  rs30404090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72687207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCTTCC CTACAGAGCA
  CTTTCCAGTG CTAGAGAGGA AGTCTTTCCA GTCCCTCCTT AGCCCCACCC CCACCCCCTT
  CATTGTCCCC AGGGTTGTTG ACACCAGAAG GGAACCTGAA GAGCCTAAGA GGTTTTTCCT
  AGAGCAGTCT ACTGCCTCGG GGACACCAGG GAGTGTACTG CAGACCATTA GGAGCCCTGG
  Y
  AGCGAAGCCC AGTCTGCAAG GCATCAAGAA GCCTTTGTCA CCTGCCGCCA GGGGGGATTA
  GCAACCCAAT TGGCTATTTT GAGGTTATCA GTTTAAAATT CCTACGTGGC CTGGAGGCTC
  TGCTCTGTCT GTATCTGCTG CCCCTCCAGG CAAGGTCTGT CTGTGTGGCT GCTGTCTTCT
  TCTTAGGTTT ATTCAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46404052	mCV23625315	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss61421321	NES16805504	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30404090					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61421321	NES16805504	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72687207 () rs orientation: forward

Symbol	Name	Function Class
Gm27204	predicted gene 27204	717 bp upstream
Gm68819	predicted gene, 68819	490 bp upstream
Rr197251	regulatory region 197251	1607 bp distal
Rr197252	regulatory region 197252	within coordinates