rs30404941 SNP Detail

Summary

• ID
  rs30404941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147977323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAATAAC GGAAAGCCGT
  TAACGTGGGC GTACAGAAAC AGTATTTGGT CAGCCCCTGA TAGATCACTA GCAGAATGCA
  GTTAGTCACA CTTACTTAGT GCAGTTGATA TTAAGAGCTG GTAAGGGTTC CTCACGCTTA
  CTTCTCGACT CCCACATCAG CTGTAACAGA GCATTCTCAT TTTCCACATG AAAGCCACGG
  R
  GTCCGTTTCA GAGCACAGAC CCAACAGACT CAACACCAAA AGATTAAGTG CCTAAGCTGC
  CTGACATTGC TTGTTTAGCT TTGCCCACAG GATTTGAATT TGCCCTACAC TACTGAACAT
  CCTAAAGTAA TTTAACTGCA TCCCAAACAC AACAGAAAGA AAGTCTATTA TGTTTCTCGC
  CTCTTTAGAT AGCAGATCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45425055	mCV22801880	ABI	CRAMUS_MOUSE	f	SNP		A	G			G		G
ss47037279	NES10848002	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G		G	G	G	G		G	G	G	G		G
ss136057878	ENSMUSSNP4367354	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss321014832	CHEV_3_147934651	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30404941					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47037279	NES10848002	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147977323 () rs orientation: forward

Symbol	Name	Function Class
Rr587183	regulatory region 587183	269 bp proximal
Rr587184	regulatory region 587184	883 bp proximal