rs30405711 SNP Detail

Summary

• ID
  rs30405711
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:37523447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTACAGCCA TCTATAATGG GACCCAATGC CCTCTTCTAG TGTGCAGACA AAATACTCAT
  ATACATAAAA TACAGAAACA GATAAACCTT TAAACAATCT TTAAAAAAAA GAGAATGCAA
  TAAACAGTTA ATGTCTGTAA TAGTCACACA CACACACACA CACACACACA CACACAGGTT
  GGAGACAGAA CATTCCAGTA CCACCACACT TTTTTTTTTT TTTTTTTTTT TTTTTTTGGG
  GATGTCTTGG AGTATGGCTG CTGAAACTTT CCATTTTCTC CTTTTCCTTT CCTTATTTGG
  K
  GATTTTTGCC ATCAGCACAT CACTCACATA GGAGGTTGTT TTTCTGACTG ACTTGTGGGA
  GGAGAGCCTC TTCTATTGTT TCAGTGTGAG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTACACGTA GGCACTGCCA GGAAGTGAAC TCAAAGAAAG TTCTAAATAA AAGGATGATG
  CTGGCCGAGC TAGTGGAAAC AGGAAGTTGT TGCTTATGTC TTCCATAGAG TAGAGGAAAG
  TACGAGGTGG AGGACATTCA CTTGACAAGT GGGAGGAGTG AAGAGAGTGG AGTCAGGGAG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39677387	mCV24511763	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30405711					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:37523447 () rs orientation: forward

Symbol	Name	Function Class
Exoc6	exocyst complex component 6	1734 bp upstream
Gm59222	predicted gene, 59222	within coordinates
Rr364832	regulatory region 364832	within coordinates
Tssr156225	transcription start site region 156225	1610 bp upstream
Tssr156226	transcription start site region 156226	1637 bp upstream
Tssr156227	transcription start site region 156227	1798 bp upstream
Tssr156228	transcription start site region 156228	1996 bp upstream