rs30405880 SNP Detail

Summary

• ID
  rs30405880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70705880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGGATCAGGA GGGCGGGGAG GGTGGACTCC CTGAGACAAG ACAAGCAGGT
  R
  GAGACAGATT AGAGGGAGGG ATTGTCATAG TAACATTTTC CGAGGTGACA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39182447	mCV24332301	ABI	CRAMUS_MOUSE	f	SNP		G	A						A
ss51530275	NES14627576	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	A	A	G	A	A	G	A
ss139684694	ENSMUSSNP6230727	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30405880					SNP	G	G	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51530275	NES14627576	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70705880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	1155 bp distal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	880 bp distal
Rr290303	regulatory region 290303	1521 bp proximal
Rr404191	regulatory region 404191	1875 bp upstream
Tssr4470	transcription start site region 4470	1819 bp downstream
Tssr126423	transcription start site region 126423	1973 bp downstream
Tssr126424	transcription start site region 126424	1899 bp downstream
Tssr126425	transcription start site region 126425	1843 bp downstream
Tssr126426	transcription start site region 126426	1707 bp downstream
Tssr126427	transcription start site region 126427	1592 bp downstream
Tssr126428	transcription start site region 126428	1580 bp downstream
Tssr126429	transcription start site region 126429	821 bp downstream
Tssr126430	transcription start site region 126430	753 bp downstream
Tssr126431	transcription start site region 126431	595 bp downstream
Tssr126432	transcription start site region 126432	557 bp downstream