rs30406540 SNP Detail

Summary

• ID
  rs30406540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104469928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAT GAGCCACTGA ACAAAGTACC
  R
  AATCTCCCTG CGCATGAGCC TTCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45425666	mCV23110214	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss135569369	ENSMUSSNP5024909	ENSEMBL	ENSEMBL_Sanger	f	SNP				A
ss320861154	CHEV_3_104366535	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30406540					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104469928 () rs orientation: forward

Symbol	Name	Function Class
Rr582541	regulatory region 582541	717 bp distal