rs30406558 SNP Detail

Summary

• ID
  rs30406558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16805005 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TAAAGTTTGC ACAACTAATG GGCCTCTCTT TCCACTGATG GCCAACTAGG CCATCTTCTG
  ATACATATGC AGCTAGAGAC ACAAACACTG GGGGTACAGG TTAGTTCATA TTGTTGTTCC
  ACCTATAGGG TTGCAGATCC CTTTAGCAAC TTGGGTACTT TCTCTAGTTC CTCCATTGGG
  GGCCCTGTGA TCCATCCAAT AGCTGACTGT GAGCATCCAC TGCTGTGTTT GCTAGGCCCC
  GGCATAGTCT CACAAGAGAC AACTATATCT GGGTCTTTTC AGCAAAACCT TGCTAGTGTA
  Y
  GCAATGGTGT CAGTGTTTGG AGACTGATTA TTGGATGGAT CCCCAGATTT GGCAGCCTCT
  ATATGGTCCA TCCTTTTCTC TCAGCTCCAA ACTTTGTCTC TGTAACTCCT TCCATGGGTG
  TTTTGTTCCC AATTCTGAGA ATGGGAAAAG TGTCCACACT TTGGTCTTCA TTCTTCTTGA
  GTTTCATGTG TTTCACAAAT TGTATCTTAT GTCTTGGGTA TTCTAAGTAT CTGGGCTAAT
  ATCCACTTAT CAGTGAGTAC ATATCATGTA AGTTTTGTGA TTGGGTTGCC TCACTCAGGA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss39182946	mCV24315948	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30406558					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16805005 () rs orientation: reverse

Symbol	Name	Function Class
Rr370925	regulatory region 370925	1843 bp upstream