rs30406684 SNP Detail

Summary

• ID
  rs30406684
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23120638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT TGAGGGGTTT GGTGTGAGAC
  W
  TTGGCATTTT GTAGAAGAGG TCCGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss39677390	mCV24752562	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss146216180	ENSMUSSNP5378488	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325768038	CHEV_19_23217764	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs30406684					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23120638 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	635 bp distal
Klf9	Kruppel-like transcription factor 9	Intron
Tssr155587	transcription start site region 155587	1607 bp downstream
Tssr155588	transcription start site region 155588	1573 bp downstream
Tssr158623	transcription start site region 158623	1198 bp upstream
Tssr158624	transcription start site region 158624	854 bp upstream