rs30406860 SNP Detail

Summary

• ID
  rs30406860
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45224367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCT CTGGTCTTTT TCTTGTGACA
  W
  ATTCACCTTT AAGTAGGGAT CACTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39182457	mCV25250199	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		A
ss62358708	NES17228908	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		A	A	T	T		A		T	T	T
ss139365009	ENSMUSSNP2733619	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							A					A
ss324582445	CHEV_14_45606585	CHEVERUD	SCREENING_POP	f	SNP													T						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30406860					SNP	T	T	T	T	T	T	T	T	A	A	T	T	T	A	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62358708	NES17228908	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45224367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	1815 bp proximal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Gm63525	predicted gene, 63525	847 bp downstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	1285 bp upstream
Rr491040	regulatory region 491040	883 bp proximal
Tssr4380	transcription start site region 4380	1858 bp downstream
Tssr125199	transcription start site region 125199	1254 bp upstream
Tssr125200	transcription start site region 125200	1282 bp upstream
Tssr125201	transcription start site region 125201	1546 bp upstream
Tssr125202	transcription start site region 125202	1666 bp upstream
Tssr125203	transcription start site region 125203	1743 bp upstream
Tssr125204	transcription start site region 125204	1986 bp upstream