rs30407037 SNP Detail

Summary

• ID
  rs30407037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100825677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCCAGA ACCTTAGCTA
  AAAAGAAGAG GAAAGGGCGG CTGAGGAGCA CAGACAGAAG GTGAAACTGA AGTGTGAGTG
  TGAGAAAGAT TCATAGTTAG GAGGGGATGA GGCACAAGTT GGGATGGGAT TGGACATTTA
  GACTAGAGGT GTCAGGAGCA ATCAAGGCGG AAAGGGATAG TGACTGATGG GGACAGATAT
  R
  ACGGTGGTGA AAGGGTAAGT CCACCAGAGC CTTTCTATCT GCTGGACGGA TCACACAGCA
  TCAGAGCCAG CCTTCCTGAC CTCCCGATAG AGCATCCTCC CTTCCTGGCT CTCCTGCCCT
  CAGTACTGTT CCTGCCTTGG GCATTAGGAG TGGGCTGAAA TCTTTAGCTA CTGTATGGAC
  CTGGCCACTT CCAGAAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45424767	mCV25367931	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G	G
ss46808957	NES10731389	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	G	G		G	G		G
ss135542938	ENSMUSSNP6816654	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss320850261	CHEV_3_100722284	CHEVERUD	SCREENING_POP	f	SNP												A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30407037					SNP	G	G	A	A	A	G	A	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808957	NES10731389	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100825677 () rs orientation: forward

Symbol	Name	Function Class
Rr581925	regulatory region 581925	1144 bp distal
Rr581926	regulatory region 581926	1403 bp distal