rs30407892 SNP Detail

Summary

• ID
  rs30407892
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88622381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA AGGCCTGCCC GGGTTACATG
  M
  GACTCAGACC CTAAAAACAA GATAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45427705	mCV23478998	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	C
ss135471508	ENSMUSSNP855051	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		C
ss320836099	CHEV_3_88518996	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30407892					SNP	A	A	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88622381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	1670 bp proximal
Rit1	Ras-like without CAAX 1	1773 bp upstream
Rr397776	regulatory region 397776	1562 bp upstream
Rr579875	regulatory region 579875	1358 bp proximal
Tssr30018	transcription start site region 30018	1764 bp upstream
Tssr30019	transcription start site region 30019	1810 bp upstream
Tssr30020	transcription start site region 30020	1842 bp upstream