rs30408224 SNP Detail

Summary

• ID
  rs30408224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9467746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCAGGAG GACCTGAGCT
  GTAAGAACTT TAGCAGAACA AGCCCAGGAG AGCAAGTCAG TAATGAGTAC TCCTTTGTGG
  GTTTTGCTTC CGTCCTGCCT CCAGGCAGCC ACCTTGAGTC CCTCTTGATG GAATATAAAA
  CTGTAAGCTG AAACACTCGC CCCATCCACA TGGGTTTAGT CAGGGTTTTA TACCATCAGC
  R
  GAAAATCAAA TAGAATAATC TCCAAACAAG TGCCCAACTG TGGATCAGTA TAGTTGAAAT
  TGCACATAGA AATCCTATGG AAAAATTGTA TTTTTTACAT TAAACTCTTT GGTTTAGCTT
  TTATAGCCTT GATTTGAGAA ATCCTTTTGG TTTCCCAAAG ATTCATGCAT TTTATCACTT
  AGAACGTTTT GGAGCCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45426643	mCV23607692	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss60369240	NES15871113	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A		G	G	G	G		G	G	G	G		A
ss134574461	ENSMUSSNP5040371	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
ss320650895	CHEV_3_9402686	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30408224					SNP	G	G	A	G	A	G	A	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369240	NES15871113	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9467746 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	334 bp upstream
Gm55345	predicted gene, 55345	201 bp downstream
Tssr28343	transcription start site region 28343	308 bp upstream
Tssr28344	transcription start site region 28344	363 bp upstream
Tssr28345	transcription start site region 28345	425 bp upstream