rs30408684 SNP Detail

Summary

• ID
  rs30408684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127077559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTCCTT AATCAATTTT
  CTTCCTGGAC TGTCCTCAGA ACTAAGCAAG CCTGCTGATG GCACCTAGAG ATTATAACGA
  AAGAATCCTT TCCTTGTGCC ATCACAATGG AACCAAGCAC TCCCTCTTCC TAGTGCCCTG
  CTACCCCTGA GCACCTACCA TAAGGAAGTC AGCCTCTAGC CTGGATCTCA CTGTACCCAA
  R
  GCCAAAGCAC AAGGGCTGGT GTTGACCTTT GCCTCACCTC TCAGCTGGGC AGAGCACACC
  TTAGTGCCCA CGCTCTCTCC CTAATCCCTG CCTACTCCCC CTGAGGGAGC CCTGAGGTAG
  AGGAAGTTTC AGCCAGAAAA CCAGAAGCCT GTCCCCAGTG TCAGCCTAGT GTTATCAAAG
  CAAGGATACA ACCATGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45425980	mCV24304498	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G		G
ss46963886	NES10886595	PERLEGEN	MM_PANEL2	f	SNP					A			G	A		G
ss135859299	ENSMUSSNP6417940	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			G
ss320952634	CHEV_3_126986828	CHEVERUD	SCREENING_POP	f	SNP							G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30408684					SNP	A	A	A	G	A	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46963886	NES10886595	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127077559 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42971	predicted gene 42971	within coordinates
Rr74269	regulatory region 74269	1817 bp proximal
Tssr35567	transcription start site region 35567	1555 bp upstream
Tssr35568	transcription start site region 35568	1526 bp upstream
Tssr35569	transcription start site region 35569	1509 bp upstream
Tssr35570	transcription start site region 35570	1435 bp upstream