rs30409604 SNP Detail

Summary

• ID
  rs30409604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118532191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCC TCACTCCCAC CCCATCTCAC
  R
  CACACAAATG TAAAAAGAAA AAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46404207	mCV23815856	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss323216702	CHEV_9_118612241	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30409604					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118532191 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688309	regulatory region 688309	1646 bp distal
Tssr87646	transcription start site region 87646	225 bp upstream
Tssr87647	transcription start site region 87647	252 bp upstream
Tssr87648	transcription start site region 87648	268 bp upstream
Tssr87649	transcription start site region 87649	312 bp upstream
Tssr87650	transcription start site region 87650	354 bp upstream
Tssr87651	transcription start site region 87651	372 bp upstream
Tssr87652	transcription start site region 87652	649 bp upstream
Tssr91958	transcription start site region 91958	1254 bp upstream