rs30409692 SNP Detail

Summary

• ID
  rs30409692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCCACCATAC AACTACATAC TCGTAGGCGG ATCGCAGCCA AAGAGACTTC TGAACGGTGC
  GCGCACGCTT TTATAGCCCG GGTGACGCTC TCCCAAGAGC CTGCGCGCGA GGGGCGGGGC
  TTTCCCGCCC ATTCCGAGCT CTCCCGCGCC TCGTCACTTT GATTGGTGTA CAGGCGGCCC
  GGATTCGATG CGTGCGTCAC AGGAATGGGC GGGCTGTGGA GGTGGGCGGG GAAAAGCCGA
  GCTGAAACCA CAGTTCTCGC GGTGTCAGAA GTCTCGTGGC TGAAGCTCTG GCGGTTCGCG
  Y
  GTTTTTCTCT TCTTGGCTGC GTTCTTCTCT GGGACCCAAA GTCTAAGGTC CCTTCGTTGC
  CGCCTCCCCC GGCATCACTT CCTATGGCGC CGGCCCTTTG TCCCCGAGAG CTGTTGGCGG
  CTCCTCTGCC CCCATCGGGG TTTTTGGTTC CGCTTGCGCC CTTCCGCTTG CCCTTTTGAT
  CTGATCTCAC TTTTGCCCGA CACAGCGCGC CGGAAGGTTT CTCGAACCGG GAGAACGGGA
  AGCCTGGGCA GTGCGAGCAG ACCCGCCCGG CCCTCGGCTT TTCCGGGAGG AAGGCATATC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45426837	mCV24054439	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss135766576	ENSMUSSNP6181588	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs30409692					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	within coordinates
Gm9369	predicted pseudogene 9369	1350 bp downstream
Prss12	serine protease 12 neurotrypsin (motopsin)	1995 bp downstream
Rr397991	regulatory region 397991	1558 bp downstream
Rr584523	regulatory region 584523	1673 bp distal
Rr584524	regulatory region 584524	1538 bp distal
Rr584525	regulatory region 584525	within coordinates
Rr584526	regulatory region 584526	327 bp proximal
Rr584527	regulatory region 584527	718 bp proximal
Snhg8	small nucleolar RNA host gene 8	256 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	526 bp upstream
Tssr31551	transcription start site region 31551	24 bp downstream
Tssr31552	transcription start site region 31552	within coordinates
Tssr35502	transcription start site region 35502	251 bp upstream
Tssr35503	transcription start site region 35503	323 bp downstream