rs30410502 SNP Detail

Summary

• ID
  rs30410502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144994960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC CTAGGGGTTA GAATCCACAA
  Y
  CACTACCAGC TCCAAGGACC ACCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss45927193	mCV23990583	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss48141286	NES11826486	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	T		C	T		T	C
ss133960859	ENSMUSSNP575300	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss322067442	CHEV_6_144997754	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs30410502					SNP	C	C	C	T	C	C	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141286	NES11826486	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144994960 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	21 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Rr145932	regulatory region 145932	within coordinates
Rr148333	regulatory region 148333	1441 bp proximal
Tssr2055	transcription start site region 2055	155 bp upstream
Tssr59519	transcription start site region 59519	686 bp downstream
Tssr64030	transcription start site region 64030	1711 bp upstream
Tssr64031	transcription start site region 64031	1680 bp upstream
Tssr64032	transcription start site region 64032	1620 bp upstream
Tssr64033	transcription start site region 64033	1574 bp upstream
Tssr64034	transcription start site region 64034	1537 bp upstream
Tssr64035	transcription start site region 64035	1477 bp upstream
Tssr64036	transcription start site region 64036	642 bp upstream
Tssr64037	transcription start site region 64037	592 bp upstream
Tssr64038	transcription start site region 64038	564 bp upstream
Tssr64039	transcription start site region 64039	547 bp upstream
Tssr64040	transcription start site region 64040	528 bp upstream
Tssr64041	transcription start site region 64041	505 bp upstream
Tssr64042	transcription start site region 64042	487 bp upstream
Tssr64043	transcription start site region 64043	429 bp upstream
Tssr64044	transcription start site region 64044	413 bp upstream
Tssr64045	transcription start site region 64045	381 bp upstream