rs30410862 SNP Detail

Summary

• ID
  rs30410862
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72716618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAATTTTT TAAAAAATTT AAAATGACAT ATTTTCTTTG
  TCATTTTTGA GGTGCACGTC TTTTTTAAAA AATTAATTAT TTTCCTGCAA TTTGCTTTTT
  W
  AAAAAAAAAA GATTTATTTA TTATATATAA GTACACTGTA GCTGTCTTCA GACACACCAG
  AAGAGGGCAT CAGATCTCAT TACAGATGGT TGTGAGCCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
ss45925703	mCV25135614	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss321822704	CHEV_6_72689629	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
rs30410862					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72716618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17550	CpG island 17550	1076 bp proximal
Gm67726	predicted gene, 67726	within coordinates
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates