rs30410942 SNP Detail

Summary

• ID
  rs30410942
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152586508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCACACA TTTCACACAC
  ATTAGTCACG GAACTTTCGA TGCCGCTGGA TTGCCGATGG ATAACTCTGT GAGAGTGGAG
  GATTTAAAAG ATGTCTCTGG GAACATTCCA AAACTCTAAA CTTAAGAATT GAAGTTGTCA
  TAATAACCCA GTATGCAAGC AAAAGAGCTA GGTTTGCTTT ATCCATTTCT GCACTTCCTT
  S
  TGCTTGGTAC TGAGGTAACT CAGCTCACCG TCCTCTGCAA GGGCTTACTG TCACGGGGTC
  TACTGTAAAA AGGACACAGT TTAATTGTCA TGAGGTTGTA TTTTAAATGC TGTTCACAGA
  GAACTCGATG CTAGAGACAA CCTAAGACTG TTAACTCCAA ACATAACTAG CATTAGAGAT
  AATTTTATTT CTTTAGTGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45427919	mCV25265468	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss136104279	ENSMUSSNP3813896	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
ss321029026	CHEV_3_152543835	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30410942					SNP	G	G	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152586508 () rs orientation: forward

Symbol	Name	Function Class
Rr66444	regulatory region 66444	908 bp distal
Rr79922	regulatory region 79922	within coordinates
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates