rs30411545 SNP Detail

Summary

• ID
  rs30411545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54970555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAC TCCACACTGA CAGGTGCCAG
  R
  ATTCCTGGAG AAATGACTGA ATCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45926997	mCV24061949	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss133206772	ENSMUSSNP4511542	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss321805147	CHEV_6_54943564	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30411545					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54970555 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	222 bp distal
Ggct	gamma-glutamyl cyclotransferase	608 bp upstream
Rr366742	regulatory region 366742	459 bp downstream
Rr630884	regulatory region 630884	913 bp distal
Rr630885	regulatory region 630885	762 bp distal
Rr630886	regulatory region 630886	130 bp distal
Tssr61105	transcription start site region 61105	692 bp upstream
Tssr61106	transcription start site region 61106	663 bp upstream
Tssr61107	transcription start site region 61107	649 bp upstream
Tssr61108	transcription start site region 61108	634 bp upstream
Tssr61109	transcription start site region 61109	613 bp upstream