rs30413051 SNP Detail

Summary

• ID
  rs30413051
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89292096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC CTTCCTCTCT CGGGGCTACA
  Y
  GGTTGGCAGG TCTTCATTCT TTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45925926	mCV24908356	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss47999817	NES11909186	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	T		T	T		T	T	T	C		T
ss133371665	ENSMUSSNP344457	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321851894	CHEV_6_89265108	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30413051					SNP	T	T	C	C	T	T	C	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999817	NES11909186	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89292096 () rs orientation: forward

Symbol	Name	Function Class
Gm26811	predicted gene, 26811	within coordinates
Plxna1	plexin A1	1199 bp downstream
Rr141611	regulatory region 141611	within coordinates
Rr141612	regulatory region 141612	1505 bp proximal
Tssr62003	transcription start site region 62003	1569 bp downstream
Tssr62004	transcription start site region 62004	1635 bp downstream