rs30413052 SNP Detail

Summary

• ID
  rs30413052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128178445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAAGAAAC AAATAACTGT ACGACGATGA GTTGTAAAAT
  CCCTTAAAGT TTCAAACATT GGTGTTAAAC TCCTCAAGTA TATATTAAAA GTGAGCTTTT
  K
  AATTCAGTCA GGAACTCCCA GTAGGGGGCG CGCTGTGCCC TAGCTAGGTG AAAGTGAGAC
  TCAAAGATTT GTTGGGCCAA AGTTTTTACT TTGAAGATT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45925927	mCV24158492	ABI	CRAMUS_MOUSE	f	SNP		G					T		G
ss51863563	NES14892176	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	G		G	G	T	T		G	T	T	G		T
ss133638001	ENSMUSSNP6996641	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321944120	CHEV_6_128151500	CHEVERUD	SCREENING_POP	f	SNP												G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30413052					SNP	T	G	G	G	T	G	T	G	G	T	T	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863563	NES14892176	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128178445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	363 bp distal
Gm4691	predicted gene 4691	668 bp downstream
Gm10010	predicted gene 10010	792 bp upstream
Gm66766	predicted gene, 66766	within coordinates
Gm68827	predicted gene, 68827	697 bp downstream
Rr399953	regulatory region 399953	674 bp downstream
Rr639207	regulatory region 639207	1168 bp distal
Rr639208	regulatory region 639208	911 bp distal
Rr639209	regulatory region 639209	764 bp distal
Rr639210	regulatory region 639210	within coordinates
Rr639211	regulatory region 639211	14 bp proximal
Tssr63410	transcription start site region 63410	912 bp upstream
Tssr63411	transcription start site region 63411	907 bp upstream
Tssr63412	transcription start site region 63412	890 bp upstream
Tssr63413	transcription start site region 63413	847 bp upstream
Tssr63414	transcription start site region 63414	832 bp upstream