rs30414403 SNP Detail

Summary

• ID
  rs30414403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48652197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC TTCCCCATTC CATCCCCTCG
  Y
  CCCTGCCCCG CTCTCTCCAC ATGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45926150	mCV23169291	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss133165790	ENSMUSSNP2878863	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss321794337	CHEV_6_48625262	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs30414403					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48652197 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	887 bp upstream
Gm46958	predicted gene, 46958	569 bp downstream
Rr629719	regulatory region 629719	within coordinates
Rr629720	regulatory region 629720	385 bp proximal
Tssr56160	transcription start site region 56160	430 bp downstream
Tssr56161	transcription start site region 56161	54 bp downstream
Tssr56162	transcription start site region 56162	851 bp upstream
Tssr56163	transcription start site region 56163	897 bp upstream
Tssr56164	transcription start site region 56164	930 bp upstream
Tssr56165	transcription start site region 56165	1145 bp upstream