rs30415042 SNP Detail

Summary

• ID
  rs30415042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89337595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTACAAC AACCAGGTCC
  ACTGGATGCT GGTGGGGTGG GGGTCGGCAT GGACCTGCTG GACACGCAGA TGGGAGCACT
  ACAAACGGCC ATAGCTCCCT GATCCGGACG GACAAGTGAG AAGTCAAACA GGAGGGCCAT
  GGTGGTGCTG GGTGTGTGCA GCAGGGACCA GGAGAGAGAA GCTGGGCTTG CAGATGCGGC
  R
  GGGACTCTGC CAGGGGCCAC GCTGGAGCAG GCCTCCAGTG GACTGCAGAG AGCTGGTACT
  CTGCTCTCTC CCAACTCTGA GTAACACTAT GGTTCTTGCT CAGAAACAAA GCCCTCAAAA
  CCCTCACAGG AGGACAGCTT GCTCCCTGTG CCCTGCTGCT CTGGAGCCTT ATGGTTGTGG
  ACAGGCCGGT CTTACTGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45925551	mCV24906654	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss133372170	ENSMUSSNP3302266	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30415042					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89337595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	644 bp proximal
Plxna1	plexin A1	within coordinates
Rr146639	regulatory region 146639	within coordinates
Tssr62008	transcription start site region 62008	1940 bp downstream
Tssr62009	transcription start site region 62009	1968 bp downstream