rs30415230 SNP Detail

Summary

• ID
  rs30415230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44059898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TTGTTTCCCA TCCCGTTCCC
  Y
  TGCCCCCCTC CAGGTGGCCA TGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39681279	mCV24575374	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss325817175	CHEV_19_44145949	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30415230					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44059898 () rs orientation: forward

Symbol	Name	Function Class
Chuk	conserved helix-loop-helix ubiquitous kinase	1876 bp downstream
Cpgi10883	CpG island 10883	1285 bp distal
Erlin1	ER lipid raft associated 1	1674 bp upstream
Gm59010	predicted gene, 59010	within coordinates
Rr548150	regulatory region 548150	1589 bp distal
Rr548151	regulatory region 548151	1198 bp distal
Rr548152	regulatory region 548152	961 bp distal
Tssr159430	transcription start site region 159430	1784 bp upstream
Tssr159431	transcription start site region 159431	1751 bp upstream
Tssr159432	transcription start site region 159432	1672 bp upstream