rs30415306 SNP Detail

Summary

• ID
  rs30415306
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48721954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGATAATA ATGAAACCCA AACCTCTTAG GACCTTTTGT
  TCTCCCTCTT TGCCTTTGCC TTGAGATGTA CATCTTTAAA AAAAAAACAA AAAACAAACA
  M
  AAAAAAACAA ACAAACAAAA CAAAACAAAA ACAAAAACAA AAAACTGTTT TGAGTTGAAG
  AGTGGGAGGA TCTTGTGCTC ACAGCAGCCT CTCTTTGAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45926545	mCV25192970	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30415306					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48721954 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17377	CpG island 17377	1731 bp distal
Gimap1	GTPase, IMAP family member 1	1225 bp downstream
Gimap5	GTPase, IMAP family member 5	1177 bp upstream
Gm28053	predicted gene, 28053	within coordinates
Rr135565	regulatory region 135565	1647 bp proximal
Rr146256	regulatory region 146256	1353 bp distal
Rr146257	regulatory region 146257	646 bp proximal
Rr368069	regulatory region 368069	986 bp upstream
Rr399641	regulatory region 399641	1475 bp upstream
Tssr56207	transcription start site region 56207	1149 bp upstream
Tssr56208	transcription start site region 56208	1168 bp upstream
Tssr56209	transcription start site region 56209	1203 bp upstream
Tssr56210	transcription start site region 56210	1217 bp upstream
Tssr56211	transcription start site region 56211	1687 bp upstream
Tssr60779	transcription start site region 60779	1074 bp downstream