rs30415599 SNP Detail

Summary

• ID
  rs30415599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58778629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGG GATGCACCCA GGACTCTGTG
  Y
  GGAGAGGCTA CTGGGGGAAT TGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
ss39682849	mCV25117204	ABI	CRAMUS_MOUSE	f	SNP	C	T	T				T		T
ss50903127	NES13490974	PERLEGEN	MM_PANEL2	f	SNP			T	T	C	T		C		C	T	T
ss146567782	ENSMUSSNP2882961	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
rs30415599					SNP	C	T	T	T	C	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50903127	NES13490974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58778629 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	within coordinates
Gm56672	predicted gene, 56672	1134 bp upstream
Rr550521	regulatory region 550521	1429 bp distal
Spmip5	sperm microtubule inner protein 5	within coordinates