rs30416581 SNP Detail

Summary

• ID
  rs30416581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18708785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGTCTGC AGCTGGGGAG CTCGAACAAA CGTCCACAGG
  AATGTTAATC ATTTTCTCAC CACAGGACCT TAGTCACAGG TTCCTGGTAA AAGTGAAATC
  R
  GACCCTCTGG TTTAAGCGAA GCTAAATGTT TTCAGTCAGT GAACATTGCG TTTCTCCCTT
  CTAGATTAAG CACCTGGGAA ATGTGTTGGG CAATTCTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss39689147	mCV23325640	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss50685045	NES13607317	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		G	A	G	G		A		G
ss146149693	ENSMUSSNP4113483	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss325733603	CHEV_19_18805911	CHEVERUD	SCREENING_POP	f	SNP												G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30416581					SNP	G	A	G	A	G	A	G	G	A	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685045	NES13607317	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18708785 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	1320 bp upstream
Gm50202	predicted gene, 50202	452 bp downstream
Gm59201	predicted gene, 59201	56 bp upstream
Rr544949	regulatory region 544949	67 bp distal
Rr544950	regulatory region 544950	within coordinates
Rr544951	regulatory region 544951	1301 bp proximal
Tssr155454	transcription start site region 155454	804 bp downstream
Tssr155455	transcription start site region 155455	772 bp downstream
Tssr155456	transcription start site region 155456	732 bp downstream
Tssr155457	transcription start site region 155457	8 bp upstream
Tssr155458	transcription start site region 155458	1319 bp upstream