rs30417008 SNP Detail

Summary

• ID
  rs30417008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107353473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAGGGAT AATGGGTGGT
  GGCTCTAGTG CCAGACATAC TCAGAAGTGT CTCTGCCTTT CTCTCTAGAC CACTTAAGGC
  AATTACTCTT TTTCCTCAGG CACCCAGGCC ACGCTGAAGG GCTTGGAGCA GGACTCTCTT
  ATGTCTAGGA AGATAAAGAA AAGAGCTCCA ATTCAAGTCT TCCCTGTGGA GACCAACTTG
  Y
  CTTTTTTGGA GAGTGGCACA ATCACTATGG GCCTGACTGG ATGTGATAGA GTTACCTGGC
  CTAAGACAGT GGCTCTGGCA TTGGCCACTC AAAGTCCCAG TGTGGCCAGT TAAACGGGAC
  AAGGGCCTCC ATGCTGTGCA TGTCTAGAAG GCTACCTACG GCCCTCTGGA TTTGTTCATA
  AGGATCTGCT CTGAGCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45428656	mCV24801940	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss46855677	NES10710867	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T		C	C	T	C	T	T	C
ss135584083	ENSMUSSNP4362983	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30417008					SNP	T	T	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855677	NES10710867	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107353473 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Intron
Rr582975	regulatory region 582975	743 bp proximal