rs30417115 SNP Detail

Summary

• ID
  rs30417115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54492368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATAGGAT TAAAGGCATG
  GGCCATCACT GCCAGTCTGC AAACTCTGAT TTGTCCTCAA CATGGTTTTT GTTTTTGTTT
  ACCACGTTGA AACATAGAAA CTGGGGTAAT CTAAACCTGT GTTTCCTGGC CTTAGTTACT
  TATATTTGGT CAGACTAAAC CCCCTCTTAC TCTTTTTGAA GTAAGAGTTA TAGTGTGTAA
  R
  TGGAGAATGT GAGTGTGGTG TGTGTGTGTG GGGGGGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGGGAGGG AGAGAGAGAG AGAGCGCTTG AGTGCTTGAG
  TGCTTCATGG CTTCATGGTA GGTATCCTTA CCTTAGCTTT TGAGACAGGT CTCCCACTCA
  CTAAACAACC TGGGGCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46404396	mCV25224585	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss322965082	CHEV_9_54432891	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30417115					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54492368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21767	CpG island 21767	1147 bp proximal
Idh3a	isocitrate dehydrogenase 3 (NAD+) alpha	1427 bp upstream
Rr401372	regulatory region 401372	1063 bp upstream
Rr679158	regulatory region 679158	967 bp distal
Rr679159	regulatory region 679159	760 bp proximal
Rr679160	regulatory region 679160	1438 bp proximal
Tssr85161	transcription start site region 85161	1366 bp upstream
Tssr85162	transcription start site region 85162	1944 bp upstream