rs30417426 SNP Detail

Summary

• ID
  rs30417426
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48591542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTAAAATGA ATTCTCATGA GCAAGCACAG GGAAGACCAA AATTTATTTG GAACTGACAT
  TTATTAACAT TATGCACCAG GAATCTATCA TAAATATTTT CCCCTGAAAT AAAATGTCTT
  AGTTACTTTT CTGTTTCTGT GATAAAACAC CATGACCGAG GCAACTTATA AGAAGCATTT
  AATTTGGCTT ATGGTTTCAG AGGATTTGAG TCCATAATGG TGGAGTGAAG GGACAGCTGA
  GGACACACCT TGATCAATAA CCTACACACA CACACACACA CACACACACA CACACACACA
  S
  CTAGAGAGAG ACAGAGACAG AGACAGACAG AAGAACCGGG AATGGCACAA GTCTTTTGAA
  ACATCAAAGC CCACCCCCAG TGACACACTC CTGTCAATGA GGTCATACTT CCTTCTACCA
  ACTGAGGGCT AAGTATTCAG ACGTATGGCC CCTCTGGAGG CCATTCTCAT CCAAACTGCC
  ACAGAAAGTC AGTTGACACT AAGACATAGG TCAGTCTTCC ACCCTGGACT GATAATGCCA
  CCCCGAGTTG TGTGTCACAC TCTCAGTTCC ATCAGCCAGT TTGTCTTTTG CTGCAGTGCC
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45926470	mCV23167883	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30417426					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48591542 () rs orientation: forward

Symbol	Name	Function Class
Gm38804	predicted gene, 38804	194 bp upstream
Gm44965	predicted gene 44965	within coordinates
Gm45021	predicted gene 45021	1358 bp downstream
Gm67224	predicted gene, 67224	802 bp upstream
Rr135555	regulatory region 135555	742 bp distal
Tssr60741	transcription start site region 60741	867 bp upstream
Tssr60742	transcription start site region 60742	826 bp upstream
Zfp775	zinc finger protein 775	within coordinates