rs30417508 SNP Detail

Summary

• ID
  rs30417508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89314099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGA CCCACTCCAA AGTATGGAGC
  R
  CCCCACCTGC CCGCCCGACT GCTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45928023	mCV24907965	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss133371767	ENSMUSSNP498007	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss321851927	CHEV_6_89287111	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30417508					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89314099 () rs orientation: forward

Symbol	Name	Function Class
Plxna1	plexin A1	within coordinates
Rr141614	regulatory region 141614	102 bp proximal
Rr150842	regulatory region 150842	900 bp distal
Rr150843	regulatory region 150843	1103 bp proximal